[torqueusers] Help to run script in torque [...]

Gus Correa gus at ldeo.columbia.edu
Mon Sep 23 15:13:36 MDT 2013


Either don't put command(s) on the background,
i.e. remove the final "&", or add a 'wait' at the end
(as already suggested).

I hope this helps,
Gus Correa

On 09/23/2013 02:33 PM, Juno Kim | AGM wrote:
> Hello Guys,
> I'm trying to run this script on my cluster with torque
>
> =============================================================================
> #!/bin/bash
> #PBS -q batch
> #PBS -N job-teste
> #PBS -l walltime=20:00:00
>
> #nohup ./paralellHdecode.sh
> /home/sapda/sapdaProject/laboratory/dataAct/am/models/18G_Test_8kHz_MA
> /home/sapda/sapdaProject/dataBase/lm/models/train05.lm
> /home/sapda/sapdaProject/dataBase/dict x00 > saida_x00.log &
> ./paralellHdecode.sh
> /home/sapda/sapdaProject/laboratory/dataAct/am/models/18G_Test_8kHz_MA
> /home/sapda/sapdaProject/dataBase/lm/models/train05.lm
> /home/sapda/sapdaProject/dataBase/dict x00 > saida_x00.log &
>
> =============================================================================
>
> but I can not, see the server log and the following message appears:
>
> 23/09/2013 15:19:17; 0008; PBS_Server.122571; Job; req_commit; job_id:
> 1057.saturno.agm.com.br
> 23/09/2013 15:19:46; 0008; PBS_Server.122379; Job;
> 1057.saturno.agm.com.br; Job Run at request of root @ localhost
> 23/09/2013 15:19:46; 000d; PBS_Server.122379; Job;
> 1057.saturno.agm.com.br; Not sending email: User does not want mail of
> this type.
> 23/09/2013 15:19:56; 0010; PBS_Server.122367; Job;
> 1057.saturno.agm.com.br; exit_status resources_used.cput = 0 = 00:00:00
> = 0kb resources_used.mem resources_used.vmem = 0kb
> resources_used.walltime = 00:00:10
> 23/09/2013 15:19:56; 000d; PBS_Server.122367; Job;
> 1057.saturno.agm.com.br; Not sending email: User does not want mail of
> this type.
> 23/09/2013 15:19:56; 0008; PBS_Server.122571; Job;
> 1057.saturno.agm.com.br; on_job_exit valid pjob: 1057.saturno.agm.com.br
> (substate = 50)
> 23/09/2013 15:20:02; 0002; PBS_Server.2245; Svr; PBS_Server; Torque
> Server Version = 4.2.4, loglevel = 0
> 23/09/2013 15:20:04; 000d; PBS_Server.122571; Job; handle_stageout; Post
> job file processing error; 1057.saturno.agm.com.br job on host ccasr06 / 0
> 23/09/2013 15:20:04; 0100; PBS_Server.122571; Job;
> 1057.saturno.agm.com.br; dequeuing from batch, state COMPLETE
> 23/09/2013 15:25:10; 0002; PBS_Server.2246; Svr; PBS_Server; Torque
> Server Version = 4.2.4, loglevel = 0
>
> Can you help me?
>
> --
> *====================*
> Atenciosamente,
>
> *Juno Costa Kim*
> *Departamento de Redes*
> *AGM Telecom*
> *====================*
> IP Phone: +55 (48) 3221-0100
> Fax : +55 (48) 3222-7747
> Email : redes03 at agm.com.br
> Website: www.agm.com.br
> Rua Joe Collaço, 163
> 88037-010 - Santa Mônica - Florianópolis - SC
>
>
>
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