[torqueusers] node is down in logs but free and online in pbsnodes

Ricardo Román Brenes roman.ricardo at gmail.com
Tue Nov 26 13:15:13 MST 2013


Hello everyone.

I got a server running torque and a lot of nodes. Im trying to make ONE of
those nodes run something.

im issuing

[rroman at meta ~]$ qsub -I -q ps3 -l nodes=1:ppn=2

and the job never runs.

i tried to force-run it with qrun but oddly... it started the interactive
job in a node that does not belong to that queue...

[rroman at meta ~]$ qsub -I -q ps3 -l nodes=1:ppn=2
qsub: waiting for job 1038.meta.cnca to start
qsub: job 1038.meta.cnca ready

[rroman at cadejos-0 ~]$ qstat -f 1038
Job Id: 1038.meta.cnca
    Job_Name = STDIN
    Job_Owner = rroman at meta.cnca
    job_state = R
    queue = ps3
    server = meta.cnca
    Checkpoint = u
    ctime = Tue Nov 26 20:27:26 2013
    Error_Path = /dev/pts/0
    exec_host = cadejos-0.cnca/1+cadejos-0.cnca/0
    Hold_Types = n
    interactive = True
    Join_Path = n
    Keep_Files = n
    Mail_Points = a
    mtime = Tue Nov 26 20:38:17 2013
    Output_Path = /dev/pts/0
    Priority = 0
    qtime = Tue Nov 26 20:27:26 2013
    Rerunable = False
    Resource_List.nodect = 1
    Resource_List.nodes = 1:ppn=2
    Resource_List.walltime = 01:00:00
    session_id = 1668
    Variable_List = PBS_O_QUEUE=ps3,PBS_O_HOME=/home/rroman,
 PBS_O_LANG=en_US.UTF-8,PBS_O_LOGNAME=rroman,
PBS_O_PATH=/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/lo
 cal/sbin:/usr/sbin:/sbin:/home/rroman/bin,
PBS_O_MAIL=/var/spool/mail/rroman,PBS_O_SHELL=/bin/bash,
PBS_O_HOST=meta.cnca,PBS_SERVER=meta.cnca,PBS_O_WORKDIR=/home/rroman,
 HOSTNAME=meta.cnca,TERM=xterm,SHELL=/bin/bash,HISTSIZE=1000,
SSH_CLIENT=10.4.255.9 59203 22,QTDIR=/usr/lib64/qt-3.3,
 QTINC=/usr/lib64/qt-3.3/include,SSH_TTY=/dev/pts/1,USER=rroman,
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=
 40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=3
0;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj
 =01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.
zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01
 ;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=0
1;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpi
 o=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.b
mp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*
 .xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;
35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=
 01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.v
ob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.r
 mvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*
.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:
 *.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36
:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=0
 1;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=
01;36:*.xspf=01;36:,MAIL=/var/spool/mail/rroman,
 PATH=/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sb
in:/usr/sbin:/sbin:/home/rroman/bin,PWD=/home/rroman,LANG=en_US.UTF-8,
 SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass,
HISTCONTROL=ignoredups,SHLVL=1,HOME=/home/rroman,LOGNAME=rroman,
 QTLIB=/usr/lib64/qt-3.3/lib,CVS_RSH=ssh,
SSH_CONNECTION=10.4.255.9 59203 192.168.0.2 22,
LESSOPEN=|/usr/bin/lesspipe.sh %s,DISPLAY=localhost:11.0,
 G_BROKEN_FILENAMES=1,_=/usr/bin/qsub
    etime = Tue Nov 26 20:27:26 2013
    submit_args = -V -I -q ps3 -l nodes=1:ppn=2
    start_time = Tue Nov 26 20:38:17 2013
    Walltime.Remaining = 3585
    start_count = 1
    fault_tolerant = False
    submit_host = meta.cnca
    init_work_dir = /home/rroman

[rroman at cadejos-0 ~]$


my nodes file:
[root at meta server_priv]# cat nodes
cadejos-0.cnca np=8 tesla xeon
cadejos-1.cnca np=8 tesla xeon
cadejos-2.cnca np=8 tesla xeon
cadejos-3.cnca np=8 xeon
cadejos-4.cnca np=8 xeon
zarate-0.cnca np=2 ps3
zarate-1.cnca np=2 ps3
zarate-2.cnca np=2 ps3
zarate-3.cnca np=2 ps3
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