[torqueusers] Job can't find the execubtale

Coyle, James J [ITACD] jjc at iastate.edu
Thu Jan 24 12:20:04 MST 2013


Fabio,

  How else is it going to find it your executable?

  It is very common to use a common filesystem, such as NFS or Lustre .
You can copy the executable, but yu alsos need all data, etc.

   I’d also put
cd $PBS_O_WORKDIR

in the script before runrun, and probably also use
./runrun  in case ./ is not in your path.


James Coyle, PhD
High Performance Computing Group
 Iowa State Univ.
web: http://jjc.public.iastate.edu/<http://www.public.iastate.edu/~jjc>



From: torqueusers-bounces at supercluster.org [mailto:torqueusers-bounces at supercluster.org] On Behalf Of Fabio Andrijauskas
Sent: Thursday, January 24, 2013 6:46 AM
To: torqueusers at supercluster.org
Subject: [torqueusers] Job can't find the execubtale

Hi all,
I am trying to submit a job to my new cluster with the script:

#!/bin/bash
#PBS -l walltime=00:5:00
#PBS -l nice=19
#PBS -q linux-spool
#PBS -e 2.err
#PBS -o 1.out

runrun
the 2.err: /var/spool/torque/mom_priv/
jobs/77.server.SC<http://77.server.SC>: line 8: runrun: command not found

But, to be successful in the process is necessary to copy the software (runrun) to the nodes manually . Is mandatory to use NFS with torque ?


--
Fabio Andrijauskas
http://www.marvinproject.org<http://www.marvinproject.org/>
http://fabio.andrijauskas.com.br/
Céus limpos......
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