[torqueusers] 答复: torqueusers Digest, Vol 96, Issue 8

Jinbianbian jinbianbian at huawei.com
Tue Jul 17 02:09:42 MDT 2012


Hi all,

Please give me some suggestions about this problem:

4. torque qorder command do not work (Jinbianbian)

The detailed description of this problem is :
	I am using torque3.0.2 and maui3.3.1 .

	I found the command "qorder" did not work.

	I also found the problem On the network.there were some people got the problems ,but I did not find any solution.

	What I want to know:

	1.      Does the problem can be solved in my cluster? and how?

	2.      Which version of torque and maui can work correctly with the command "qorder"


Thank you 
 Mini

-----邮件原件-----
发件人: torqueusers-bounces at supercluster.org [mailto:torqueusers-bounces at supercluster.org] 代表 torqueusers-request at supercluster.org
发送时间: 2012年7月14日 2:31
收件人: torqueusers at supercluster.org
主题: torqueusers Digest, Vol 96, Issue 8

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Today's Topics:

   1. Re: qsub doesn't find the executable file (Lawrence Lowe)
   2. Re: qsub doesn't find the executable file (Philippe Weill)
   3. Re: qsub doesn't find the executable file (Mahmood Naderan)
   4. torque qorder command do not work (Jinbianbian)
   5. Re: TORQUE 4.0 and hwloc (Andrus, Brian Contractor)


----------------------------------------------------------------------

Message: 1
Date: Fri, 13 Jul 2012 09:36:45 +0100 (BST)
From: Lawrence Lowe <L.S.Lowe at bham.ac.uk>
Subject: Re: [torqueusers] qsub doesn't find the executable file
To: Mahmood Naderan <nt_mahmood at yahoo.com>,	Torque Users Mailing List
	<torqueusers at supercluster.org>
Message-ID:
	<alpine.LFD.2.00.1207130925490.23910 at eprex11.ph.bham.ac.uk>
Content-Type: text/plain; charset="iso-8859-15"

Hi, maybe the NFS filesystem is mounted with the "noexec" option.

LSL.

On Thu, 12 Jul 2012, Mahmood Naderan wrote:

> I think I found the problem but don't know how to fix that.
> /home is shared via NFS. So I ssh to a node (other than server).
>
> u1 at orca:~/workspace$ ssh ws05
> Last login: Sat Jun? 4 14:22:08 2011 from hpclab.orca
> u1 at ws05:~$ ls
> workspace
>
> u1 at ws05:~$ cd workspace/
> u1 at ws05:~/workspace$ ls -l msim
> -rwxr-xr-x 1 u1 users 81179 Jul 12? 2012 msim
>
> u1 at ws05:~/workspace$ ./msim
> -bash: ./msim: No such file or directory
>
>
> It seems that on other nodes, it can not execute!
>
>
> // Naderan *Mahmood;
>
>
> ----- Original Message -----
> From: Mahmood Naderan <nt_mahmood at yahoo.com>
> To: Torque Users Mailing List <torqueusers at supercluster.org>
> Cc:
> Sent: Friday, July 13, 2012 11:01 AM
> Subject: Re: [torqueusers] qsub doesn't find the executable file
>
> Chris and Sreedha,
> none of the proposed methods worked.
>
> /var/spool/pbs/mom_priv/jobs/61251.hpclab.orca.SC: line 8: ./msim: No such file or directory
>
> and
>
> /var/spool/pbs/mom_priv/jobs/61252.hpclab.orca.SC: line 8: /home/u1/workspace/msim: No such file or directory
>
> any more idea?
> Actually I myself have not faced such problem. One of our users encountered that and now I have no more idea about that.
>
> ?
> // Naderan *Mahmood;
>
>
> ----- Original Message -----
> From: Chris Evert <chris.evert at geokinetics.com>
> To: torqueusers at supercluster.org
> Cc:
> Sent: Friday, July 13, 2012 12:33 AM
> Subject: Re: [torqueusers] qsub doesn't find the executable file
>
> Naderan Mahmood,
>
> It looks like . is not in your path.? If msim is in $PBS_O_WORKDIR, then
> ./msim should work (like from the command line.)
>
> Another option is to provide the full path of msim in the file tor.
>
> Hope this helps,
> Chris
> --
> Chris Evert
> Geokinetics, Inc.
> Houston, TX
>
> On 07/12/2012 02:22 PM, Mahmood Naderan wrote:
>> Dear all,
>> I am trying to qsub an executable file but it doesn't find the file!
>>
>> -rwxrwxrwx? 1 u1 users 76277 Jul 12 23:08 msim
>> -rw-r--r--? 1 u1 users? ? 89 Jul 12 23:45 tor
>>
>>
>> tor file contains
>>
>> #PBS -N test
>> #PBS -V
>> #PBS -q orcaq
>> #PBS -l nodes=1
>> #PBS -j oe
>> cd $PBS_O_WORKDIR
>> msim
>>
>>
>> However the output file says:
>> /var/spool/pbs/mom_priv/jobs/61247.hpclab.orca.SC: line 8: msim: command not found
>>
>>
>> binary file is not corrupted, since when run ./msim, it shows the usage.
>>
>> any idea for that?
>>
>> // Naderan *Mahmood;
>> _______________________________________________
>> torqueusers mailing list
>> torqueusers at supercluster.org
>> http://www.supercluster.org/mailman/listinfo/torqueusers
>>
>
> _______________________________________________
> torqueusers mailing list
> torqueusers at supercluster.org
> http://www.supercluster.org/mailman/listinfo/torqueusers
>
> _______________________________________________
> torqueusers mailing list
> torqueusers at supercluster.org
> http://www.supercluster.org/mailman/listinfo/torqueusers
>
> _______________________________________________
> torqueusers mailing list
> torqueusers at supercluster.org
> http://www.supercluster.org/mailman/listinfo/torqueusers
>

------------------------------

Message: 2
Date: Fri, 13 Jul 2012 10:39:34 +0200
From: Philippe Weill <philippe.Weill at latmos.ipsl.fr>
Subject: Re: [torqueusers] qsub doesn't find the executable file
To: Mahmood Naderan <nt_mahmood at yahoo.com>,	Torque Users Mailing List
	<torqueusers at supercluster.org>
Message-ID: <4FFFDEC6.5030502 at latmos.ipsl.fr>
Content-Type: text/plain; charset=UTF-8; format=flowed

Le 13/07/2012 08:41, Mahmood Naderan a ?crit :
> I think I found the problem but don't know how to fix that.
> /home is shared via NFS. So I ssh to a node (other than server).
>
> u1 at orca:~/workspace$ ssh ws05
> Last login: Sat Jun  4 14:22:08 2011 from hpclab.orca
> u1 at ws05:~$ ls
> workspace
>
> u1 at ws05:~$ cd workspace/
> u1 at ws05:~/workspace$ ls -l msim
> -rwxr-xr-x 1 u1 users 81179 Jul 12  2012 msim
>
> u1 at ws05:~/workspace$ ./msim
> -bash: ./msim: No such file or directory
>
>
> It seems that on other nodes, it can not execute!
>
>

could you do a

file ./msim


-- 
  Weill Philippe -  Administrateur Systeme et Reseaux
  CNRS/UPMC/IPSL   LATMOS (UMR 8190)
  Tour 45/46 3e Etage B302 - 4 Place Jussieu - 75252 Paris Cedex 05 -  FRANCE
  Email:philippe.weill at latmos.ipsl.fr | tel:+33 0144274759 Fax:+33 0144273776


------------------------------

Message: 3
Date: Fri, 13 Jul 2012 02:31:37 -0700 (PDT)
From: Mahmood Naderan <nt_mahmood at yahoo.com>
Subject: Re: [torqueusers] qsub doesn't find the executable file
To: torque cluster <torqueusers at supercluster.org>
Message-ID:
	<1342171897.79889.YahooMailNeo at web111722.mail.gq1.yahoo.com>
Content-Type: text/plain; charset=iso-8859-1

ok, file command points the right direction.

msim: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV), dynamically linked (uses shared libs), for NU/Linux 2.6.15, BuildID[sha1]=0xcf66490c90387ce270d14bf4f4e3a01294935a36, not stripped



So the problem is that I want to run a 32bit binary on a amd64 os. Server has the package "ia32-libs" however I didn't install that on the nodes.

Thanks a lot for your help.

?
// Naderan *Mahmood;


----- Original Message -----
From: Philippe Weill <philippe.Weill at latmos.ipsl.fr>
To: Mahmood Naderan <nt_mahmood at yahoo.com>; Torque Users Mailing List <torqueusers at supercluster.org>
Cc: 
Sent: Friday, July 13, 2012 1:09 PM
Subject: Re: [torqueusers] qsub doesn't find the executable file

Le 13/07/2012 08:41, Mahmood Naderan a ?crit :
> I think I found the problem but don't know how to fix that.
> /home is shared via NFS. So I ssh to a node (other than server).
>
> u1 at orca:~/workspace$ ssh ws05
> Last login: Sat Jun? 4 14:22:08 2011 from hpclab.orca
> u1 at ws05:~$ ls
> workspace
>
> u1 at ws05:~$ cd workspace/
> u1 at ws05:~/workspace$ ls -l msim
> -rwxr-xr-x 1 u1 users 81179 Jul 12? 2012 msim
>
> u1 at ws05:~/workspace$ ./msim
> -bash: ./msim: No such file or directory
>
>
> It seems that on other nodes, it can not execute!
>
>

could you do a

file ./msim


-- 
? Weill Philippe -? Administrateur Systeme et Reseaux
? CNRS/UPMC/IPSL?  LATMOS (UMR 8190)
? Tour 45/46 3e Etage B302 - 4 Place Jussieu - 75252 Paris Cedex 05 -? FRANCE
? Email:philippe.weill at latmos.ipsl.fr | tel:+33 0144274759 Fax:+33 0144273776



------------------------------

Message: 4
Date: Fri, 13 Jul 2012 02:15:56 +0000
From: Jinbianbian <jinbianbian at huawei.com>
Subject: [torqueusers] torque qorder command do not work
To: "torqueusers at supercluster.org" <torqueusers at supercluster.org>
Cc: Zhongjianfeng <zhongjianfeng at huawei.com>
Message-ID:
	<EF4B84BE2A84584ABD70B4D7E7BCC15A2B79AEE3 at SZXEML511-MBS.china.huawei.com>
	
Content-Type: text/plain; charset="us-ascii"

Hi,all

I am using torque3.0.2 and maui3.3.1 .

I found the command "qorder" did not work.

I also found the problem On the network.there were some people got the problems ,but I did not find any solution.

What I want to know:

1.      Does the problem can be solved in my cluster? and how?

2.      Which version of torque and maui can work correctly with the command "qorder"


Thank you

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------------------------------

Message: 5
Date: Fri, 13 Jul 2012 18:31:22 +0000
From: "Andrus, Brian Contractor" <bdandrus at nps.edu>
Subject: Re: [torqueusers] TORQUE 4.0 and hwloc
To: Torque Users Mailing List <torqueusers at supercluster.org>
Message-ID:
	<ADC981242279AD408816CB7141A2789D3F0D05EA at GROWLER.ern.nps.edu>
Content-Type: text/plain; charset="us-ascii"

Hmm.

I am trying to just build torque 4.0.1 using cpusets and I keep getting:
===================================================
checking for HWLOC... configure: error: cpuset support requires the hwloc package



Perhaps you should add the directory containing 'hwloc.pc'
to the PKG_CONFIG_PATH environment variable.

Alternatively, you may set the environment variables
HWLOC_CFLAGS and HWLOC_LIBS before running configure.

Example:
export HWLOC_CFLAGS='-I/usr/local/hwloc-1.1/include'
export HWLOC_LIBS='-L/usr/local/hwloc-1.1/lib -lhwloc'

error: Bad exit status from /var/tmp/rpm-tmp.iowncz (%build)
===================================================
I have the stock hwloc packages installed:
[root at hamming SPECS]# rpm -qa |grep hwloc
hwloc-devel-1.1-0.1.el6.i686
hwloc-1.1-0.1.el6.x86_64
hwloc-devel-1.1-0.1.el6.x86_64
hwloc-1.1-0.1.el6.i686

I have tried setting HWLOC_CFLAGS and HWLOC_LIBS to no avail.

Is there something special to set when using the stock packages for CentOS 6.3?


Brian Andrus
ITACS/Research Computing
Naval Postgraduate School
Monterey, California
voice: 831-656-6238






-----Original Message-----
From: torqueusers-bounces at supercluster.org [mailto:torqueusers-bounces at supercluster.org] On Behalf Of DuChene, StevenX A
Sent: Wednesday, April 04, 2012 12:07 PM
To: Torque Users Mailing List
Subject: Re: [torqueusers] TORQUE 4.0 and hwloc

Yeah, when I passed the "-with cpuset" to the rpmbuild command then I got the following in my stdout from the actual rpm build process (from the configure part actually):

checking whether to allow geometry requests... no checking whether to support NUMA systems... no checking for HWLOC... yes checking for hwloc_bitmap_alloc in -lhwloc... yes

and then during the actual compile I see a -lhwloc being linked in.
--
Steven DuChene

-----Original Message-----
From: torqueusers-bounces at supercluster.org [mailto:torqueusers-bounces at supercluster.org] On Behalf Of Gabe Turner
Sent: Wednesday, April 04, 2012 10:51 AM
To: torqueusers at supercluster.org
Subject: Re: [torqueusers] TORQUE 4.0 and hwloc

On Wed, Apr 04, 2012 at 12:09:47PM -0500, Gabe Turner wrote:
> It looks to me like the spec file is supporting the --with option to 
> rpmbuild. So cpuset will be enabled as a configure option if you pass 
> '--with cpuset' to rpmbuild. Is that what you are already trying?

I just did this to build the RPMs with support for cpusets. Admittedly, it is a bit cumbersome, though perhaps only because I have hwloc installed in a centralized location and not from an RPM.

gabe at node1084 [~/torque-4.0.1] % make rpm HWLOC_CFLAGS='-I/soft/hwloc/1.4.1/include' HWLOC_LIBS='-L/soft/hwloc/1.4.1/lib -lhwloc' RPM_AC_OPTS+='--with cpuset'

gabe at node1084 [~/torque-4.0.1] % rpm -qRp ~/rpmbuild/RPMS/x86_64/torque-client-4.0.1-1.cri.x86_64.rpm
torque = 4.0.1-1.cri
.
.
.
libhwloc.so.5()(64bit)
.
.
.


-- 
Gabe Turner                                             gabe at msi.umn.edu
HPC Systems Administrator,
University of Minnesota
Supercomputing Institute                          http://www.msi.umn.edu
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------------------------------

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