[torqueusers] qsub doesn't find the executable file

Lawrence Lowe L.S.Lowe at bham.ac.uk
Fri Jul 13 02:36:45 MDT 2012


Hi, maybe the NFS filesystem is mounted with the "noexec" option.

LSL.

On Thu, 12 Jul 2012, Mahmood Naderan wrote:

> I think I found the problem but don't know how to fix that.
> /home is shared via NFS. So I ssh to a node (other than server).
>
> u1 at orca:~/workspace$ ssh ws05
> Last login: Sat Jun  4 14:22:08 2011 from hpclab.orca
> u1 at ws05:~$ ls
> workspace
>
> u1 at ws05:~$ cd workspace/
> u1 at ws05:~/workspace$ ls -l msim
> -rwxr-xr-x 1 u1 users 81179 Jul 12  2012 msim
>
> u1 at ws05:~/workspace$ ./msim
> -bash: ./msim: No such file or directory
>
>
> It seems that on other nodes, it can not execute!
>
>
> // Naderan *Mahmood;
>
>
> ----- Original Message -----
> From: Mahmood Naderan <nt_mahmood at yahoo.com>
> To: Torque Users Mailing List <torqueusers at supercluster.org>
> Cc:
> Sent: Friday, July 13, 2012 11:01 AM
> Subject: Re: [torqueusers] qsub doesn't find the executable file
>
> Chris and Sreedha,
> none of the proposed methods worked.
>
> /var/spool/pbs/mom_priv/jobs/61251.hpclab.orca.SC: line 8: ./msim: No such file or directory
>
> and
>
> /var/spool/pbs/mom_priv/jobs/61252.hpclab.orca.SC: line 8: /home/u1/workspace/msim: No such file or directory
>
> any more idea?
> Actually I myself have not faced such problem. One of our users encountered that and now I have no more idea about that.
>
>  
> // Naderan *Mahmood;
>
>
> ----- Original Message -----
> From: Chris Evert <chris.evert at geokinetics.com>
> To: torqueusers at supercluster.org
> Cc:
> Sent: Friday, July 13, 2012 12:33 AM
> Subject: Re: [torqueusers] qsub doesn't find the executable file
>
> Naderan Mahmood,
>
> It looks like . is not in your path.  If msim is in $PBS_O_WORKDIR, then
> ./msim should work (like from the command line.)
>
> Another option is to provide the full path of msim in the file tor.
>
> Hope this helps,
> Chris
> --
> Chris Evert
> Geokinetics, Inc.
> Houston, TX
>
> On 07/12/2012 02:22 PM, Mahmood Naderan wrote:
>> Dear all,
>> I am trying to qsub an executable file but it doesn't find the file!
>>
>> -rwxrwxrwx  1 u1 users 76277 Jul 12 23:08 msim
>> -rw-r--r--  1 u1 users    89 Jul 12 23:45 tor
>>
>>
>> tor file contains
>>
>> #PBS -N test
>> #PBS -V
>> #PBS -q orcaq
>> #PBS -l nodes=1
>> #PBS -j oe
>> cd $PBS_O_WORKDIR
>> msim
>>
>>
>> However the output file says:
>> /var/spool/pbs/mom_priv/jobs/61247.hpclab.orca.SC: line 8: msim: command not found
>>
>>
>> binary file is not corrupted, since when run ./msim, it shows the usage.
>>
>> any idea for that?
>>
>> // Naderan *Mahmood;
>> _______________________________________________
>> torqueusers mailing list
>> torqueusers at supercluster.org
>> http://www.supercluster.org/mailman/listinfo/torqueusers
>>
>
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