[torqueusers] PBS_NODEFILE incomplete (entries for last(?) nodeonly)
gordon.wells at gmail.com
Thu Oct 7 02:07:01 MDT 2010
I've tried that, unfortunately I never get a $PBS_NODEFILE that spans more
than one node.
Dr Gordon Wells
Bioinformatics and Computational Biology Unit
Department of Biochemistry
University of Pretoria
On 7 October 2010 10:02, Vaibhav Pol <vaibhavp at cdac.in> wrote:
> Hi ,
> you must set server as well as queue attribute.
> set server resources_available.nodect = (number of nodes * cpus
> per node)
> set <queue name> resources_available.nodect = (number of nodes *
> cpus per node)
> Thanks and regards,
> Vaibhav Pol
> National PARAM Supercomputing Facility
> Centre for Development of Advanced Computing
> Ganeshkhind Road
> Pune University Campus
> Phone +91-20-25704176 ext: 176
> Cell Phone : +919850466409
> On Thu, 7 Oct 2010, Gordon Wells wrote:
>> I've now tried torque 2.5.2 as well, same problems.
>> Setting resources_available.nodect has no effect except allowing me to use
>> "-l nodes=x" with x > 14
>> -- max(∫(εὐδαιμονία)dt)
>> Dr Gordon Wells
>> Bioinformatics and Computational Biology Unit
>> Department of Biochemistry
>> University of Pretoria
>> On 6 October 2010 20:04, Glen Beane <glen.beane at gmail.com> wrote:
>> On Wed, Oct 6, 2010 at 1:12 PM, Gordon Wells <gordon.wells at gmail.com>
>>>> Can I confirm that this will definitely fix the problem? Unfortunately
>>>> cluster also needs to be glite compatible, 2.3.6 seems to be the latest
>>>> will work
>>> i'm not certain... do you happen to have set server
>>> resources_available.nodect set? I have seen bugs with PBS_NODEFILE
>>> contents when this server attribute is set. This may be a
>>> manifestation of this bug, and I'm not sure if it has been corrected.
>>> try unsetting this and submitting a job with -l nodes=X:ppn=Y
>>> torqueusers mailing list
>>> torqueusers at supercluster.org
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