[torqueusers] PBS_NODEFILE incomplete (entries for last(?) nodeonly)
vaibhavp at cdac.in
Thu Oct 7 02:02:23 MDT 2010
you must set server as well as queue attribute.
set server resources_available.nodect = (number of nodes * cpus per node)
set <queue name> resources_available.nodect = (number of nodes * cpus per node)
Thanks and regards,
National PARAM Supercomputing Facility
Centre for Development of Advanced Computing
Pune University Campus
Phone +91-20-25704176 ext: 176
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On Thu, 7 Oct 2010, Gordon Wells wrote:
> I've now tried torque 2.5.2 as well, same problems.
> Setting resources_available.nodect has no effect except allowing me to use
> "-l nodes=x" with x > 14
> -- max(â«(Îµá½Î´Î±Î¹Î¼Î¿Î½Î¯Î±)dt)
> Dr Gordon Wells
> Bioinformatics and Computational Biology Unit
> Department of Biochemistry
> University of Pretoria
> On 6 October 2010 20:04, Glen Beane <glen.beane at gmail.com> wrote:
>> On Wed, Oct 6, 2010 at 1:12 PM, Gordon Wells <gordon.wells at gmail.com>
>>> Can I confirm that this will definitely fix the problem? Unfortunately
>>> cluster also needs to be glite compatible, 2.3.6 seems to be the latest
>>> will work
>> i'm not certain... do you happen to have set server
>> resources_available.nodect set? I have seen bugs with PBS_NODEFILE
>> contents when this server attribute is set. This may be a
>> manifestation of this bug, and I'm not sure if it has been corrected.
>> try unsetting this and submitting a job with -l nodes=X:ppn=Y
>> torqueusers mailing list
>> torqueusers at supercluster.org
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