[torqueusers] Queue script job
guillermo.marco at gmail.com
Fri Dec 10 01:08:48 MST 2010
I'll try both solutions. Thanks for help guys.
2010/12/9 Gus Correa <gus at ldeo.columbia.edu>
> Troy Baer wrote:
> > On Thu, 2010-12-09 at 12:08 +0100, Guille wrote:
> >> How i can make a PBS script to make him wait to run till another job
> >> in the same qeue has finished.
> >> I mean for exemple: on queue1 i have job1 running, and i want to job2
> >> to wait till job1 has finished to be executed.
> > Please take a look at the qsub man page, specifically the section about
> > -W depend=.
> > --Troy
> Hi Guille
> Besides the -W depend=[afterok, etc] that Troy suggests,
> if you are running a series of jobs where the new one
> continues the work done by the previous, you may
> resubmit the job from your Torque/PBS script,
> instead of queuing up the whole series at once.
> Something like this:
> #PBS ...
> mpirun -np 32 ./myprogram
> qsub myjob.pbs (or qsub $0)
> To make this work, first you need to do:
> qmgr -c 'set server allow_node_submit = True'
> if this server attribute is not yet set this way.
> We use both mechanisms here, depending on what is needed.
> My two cents,
> Gus Correa
> torqueusers mailing list
> torqueusers at supercluster.org
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