[torqueusers] /usr/local/bin in the pbs environment
giwrgis at chemistry.uoc.gr
Mon Apr 12 15:18:21 MDT 2010
My problem is that I am "sourcing" the .bashrc
In the pbs file I have the following line
where ".bashr_modified" is a modified version of the original .bashrc
Needless to say that if I do it manually it works just fine.
> On Mon, Apr 12, 2010 at 2:48 PM, Greenseid, Joseph M (IS)
> <Joseph.Greenseid at ngc.com> wrote:
>> Does it look like the environment corresponds to what's in the
>> pbs_environment file in your pbs spool directory?
> It looks like it "doubles" the path after /home/user/bin without some
> of the items at the beginning of the $PATH. Not at all sure how that's
> Here's the .pbs file :
> #PBS -M devnull
> #PBS -m bae
> #PBS -l nodes=1:ppn=1
> #PBS -l mem=100mb
> #PBS -l walltime=00:1:00
> #PBS -j oe
> cd ~/pbstest
> which qsub
> echo $PATH
> cat /dev/urandom > /dev/null
> Here's "echo $PATH" from the shell on the same machine where the job ran:
> and here's the output from the .pbs run :
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> qsub: Command not found.
> =>> PBS: job killed: walltime 101 exceeded limit 60
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