[torqueusers] segfault with many depencies

Naveed Near-Ansari naveed at caltech.edu
Thu Jul 23 11:26:53 MDT 2009


2.3.6 as packaged in the torque roll for rocks 5.2.

Naveed


On Thu, 2009-07-23 at 11:19 -0600, Josh Butikofer wrote:
> What version of TORQUE are you using?
> 
> Josh Butikofer
> Cluster Resources, Inc.
> #############################
> 
> 
> Naveed Near-Ansari wrote:
> > I alternet a submission script for FSL which is now being used by some
> > of my users. FSL submissions generate alot of depencies.  When the
> > number of dependencies get high, qsub segfaults. Is this a known
> > problem?  is their a workaround?  decreasing the depencies allows it to
> > work.
> > 
> > 
> > 
> > $ qsub -l nodes=1 -l pmem=256mb -V -d /home/user/ -q
> > short.q -M user at host.caltech.edu -N bpx_postproc -m ae -o
> > /home/user/data/maq004/dish1.bedpostX/logs//home/user/data/maq004/dish1.bed=
> > postX/logs.out
> > -e
> > /home/user/data/maq004/dish1.bedpostX/logs//home/user/data/maq004/dish1.=
> > bedpostX/logs.err
> > -W
> > depend=3Dafterany:9080:9081:9082:9083:9084:9085:9086:9087:9088:9089:9090=
> > :9091:9092:9093:9094:9095:9096:9097:9098:9099:9100:9101:9102:9103:9104:9105=
> > :9106:9107:9108:9109:9110:9111:9112:9113:9114:9115:9116:9117:9118:9119:9120=
> > :9121:9122:9123:9124:9125:9126:9127:9128:9129:9130:9131:9132:9133:9134:9135=
> > :9136:9137:9138:9139:9140:9141:9142:9143:9144:9145:9146:9147:9148:9149:9150=
> > :9151:9152:9153:9154:9155:9156:9157:9158:9159:9160:9161:9162:9163:9164
> > /tmp/tmp.hZBQb27634
> > Segmentation fault
> > 
> > _______________________________________________
> > torqueusers mailing list
> > torqueusers at supercluster.org
> > http://www.supercluster.org/mailman/listinfo/torqueusers
> 


More information about the torqueusers mailing list