[torqueusers] segfault with many depencies

Josh Butikofer josh at clusterresources.com
Thu Jul 23 11:19:47 MDT 2009


What version of TORQUE are you using?

Josh Butikofer
Cluster Resources, Inc.
#############################


Naveed Near-Ansari wrote:
> I alternet a submission script for FSL which is now being used by some
> of my users. FSL submissions generate alot of depencies.  When the
> number of dependencies get high, qsub segfaults. Is this a known
> problem?  is their a workaround?  decreasing the depencies allows it to
> work.
> 
> 
> 
> $ qsub -l nodes=1 -l pmem=256mb -V -d /home/user/ -q
> short.q -M user at host.caltech.edu -N bpx_postproc -m ae -o
> /home/user/data/maq004/dish1.bedpostX/logs//home/user/data/maq004/dish1.bed=
> postX/logs.out
> -e
> /home/user/data/maq004/dish1.bedpostX/logs//home/user/data/maq004/dish1.=
> bedpostX/logs.err
> -W
> depend=3Dafterany:9080:9081:9082:9083:9084:9085:9086:9087:9088:9089:9090=
> :9091:9092:9093:9094:9095:9096:9097:9098:9099:9100:9101:9102:9103:9104:9105=
> :9106:9107:9108:9109:9110:9111:9112:9113:9114:9115:9116:9117:9118:9119:9120=
> :9121:9122:9123:9124:9125:9126:9127:9128:9129:9130:9131:9132:9133:9134:9135=
> :9136:9137:9138:9139:9140:9141:9142:9143:9144:9145:9146:9147:9148:9149:9150=
> :9151:9152:9153:9154:9155:9156:9157:9158:9159:9160:9161:9162:9163:9164
> /tmp/tmp.hZBQb27634
> Segmentation fault
> 
> _______________________________________________
> torqueusers mailing list
> torqueusers at supercluster.org
> http://www.supercluster.org/mailman/listinfo/torqueusers


More information about the torqueusers mailing list