[torqueusers] pbs job running slow
abhig at Princeton.EDU
Mon Jul 13 21:15:05 MDT 2009
Here is the script we are running. This is basically a test script of
the actual script to test the performance.
#PBS -j oe
#PBS -o qsub1.out
#PBS -m ae
###PBS -M abhig at princeton.edu
#PBS -l cput=36:0:0
###PBS -l mem=1GB
#PBS -l nodes=node022
time nuwa.py -l4 -n100 -H 345788 -o test1.root -m FullChain > test1.log
The command I run during interactively were
# qsub -I run.sh
This took us to node022 and then
run.sh is the name of the script I wrote above.
When job was finished, I run exit.
Prakash Velayutham wrote:
> Send your job commands when you run them interactively and also send
> the contents of your batch file.
> On Jul 13, 2009, at 4:42 PM, abhig at Princeton.EDU
> <mailto:abhig at Princeton.EDU> wrote:
>> Hi Prakash,
>> Thanks for your reply. I tried running job interactively and it seems
>> that it is running normal. But ssh based job is running slow. Any
>> further suggestion?
>> On Mon 13/07/09 4:06 PM , Prakash Velayutham
>> prakash.velayutham at cchmc.org <mailto:prakash.velayutham at cchmc.org> sent:
>> What is the job? And what does your batch file look like?
>> The best way to debug would be to use "qsub -I" and see if
>> interactive PBS job also runs slow compared to a direct SSH-based
>> job (job being the same). Then go from there.
>> On Jul 13, 2009, at 3:55 PM, abhig at Princeton.EDU
>>> Hi All,
>>> The jobs with PBS are running very slow. Earlier I was thinking
>>> that it might be because of rcp so I tried configuring a node
>>> with usecp. The log file shows that it read the usecp parameter
>>> but the speed is still slow. Can someone suggest me anything?
>>> The same job running interactively take almost half the time.
>>> torqueusers mailing list
>>> torqueusers at supercluster.org
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