[torqueusers] PBS with abaqus

Brock Palen brockp at umich.edu
Mon Jan 12 09:02:39 MST 2009


Hi,
We run abaqus on torque all the time, so there is no reason we can't  
make this work.

is /data/nmoulin/nmoulin_COINv71_7518

A shared filesystem across all nodes in your cluster?  It will need  
to be.

Brock Palen
www.umich.edu/~brockp
Center for Advanced Computing
brockp at umich.edu
(734)936-1985



On Jan 12, 2009, at 10:04 AM, Nicolas Moulin wrote:

> Hi
> I'm setting up a torque-abaqus cluster.
> I'm getting some errors when I submit an abaqus parallel job.
> When I start the calcul without PBS in standard or parallel, for  
> exemple:
>
> /abaqus job=COINv71 input=COINv71.inp scratch=$SCRATCH interactive
> abaqus job=COINv71 input=COINv71.inp scratch=$SCRATCH interactive  
> cpus=4
>
> /I have no errors.
> When I use the next PBS script to start the abaqus calcul, I have  
> no errors:
> /#PBS -N jobabaqus
> #PBS -o jobabaqus.out
> #PBS -e jobabaqus.err
> #PBS -l nodes=1:ppn=1
> #PBS -l pmem=3000mb
> #PBS -l walltime=01:00:00
> #PBS -S /bin/sh
> #PBS -V
> module load abaqus
> SCRATCH=/data/$USER
> if [ ! -d $SCRATCH ] ; then
> echo "No local scratch filesystem"
> exit 1
> fi
> cd $PBS_O_WORKDIR
> abaqus job=COINv71 input=COINv71.inp scratch=$SCRATCH interactive
> rm -rf $SCRATCH/*/
>
> But, if I try to start a parallel job with a PBS script with the  
> next script:
> /#PBS -N jobabaqus
> #PBS -o jobabaqus.out
> #PBS -e jobabaqus.err
> #PBS -l nodes=4:ppn=1
> #PBS -l pmem=3000mb
> #PBS -l walltime=01:00:00
> #PBS -S /bin/sh
> #PBS -V
> module load abaqus
> SCRATCH=/data/$USER
> if [ ! -d $SCRATCH ] ; then
> echo "No local scratch filesystem"
> exit 1
> fi
> cd $PBS_O_WORKDIR
> abaqus job=COINv71 input=COINv71.inp scratch=$SCRATCH interactive // 
> cpus=4/
> /rm -rf $SCRATCH/*/
>
> I'm getting some errors like that :
> /Abaqus License Manager checked out the following licenses:
> Abaqus/Standard checked out 8 tokens.
> <27 out of 35 licenses remain available>.
> mpid: Cannot set work directory: No such file or directory
> mpid: MPI_WORKDIR=/data/nmoulin/nmoulin_COINv71_7518/
>
>
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>
>



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