[torqueusers] Torque 2.3.1-snap.200805191843 out of filedescriptor errors

Chris Samuel csamuel at vpac.org
Wed May 28 06:11:39 MDT 2008


Never quite sure whether these should go to the users
or the dev list, so this is going to both. :-)

With Torque 2.3.1-snap.200805191843 I'm suddenly seeing
pbs_mom's dieing with:

05/28/2008 16:23:22;0001;   pbs_mom;Svr;pbs_mom;Too many open files (24) in mom_get_sample, 31772: get_proc_stat

This is odd because the maximum number of open files
according to ulimit is 1024:

open files                      (-n) 1024

This is with cpusets enabled and with two simple patches
applied to extend inter-mom TCP timeouts and to put
tm_spawn tasks in the jobset rather than the per-vnode
cpusets (as we're using OpenMPI).

Looking at the output of lsof they are almost all open file
descriptors on various deleted cpuset files for past jobs,
and I've attached a sample output for one that hasn't (yet)
keeled over.

Will attempt to see if I can spot why they're not getting closed..

cheers!
Chris
-- 
Christopher Samuel - (03) 9925 4751 - Systems Manager
 The Victorian Partnership for Advanced Computing
 P.O. Box 201, Carlton South, VIC 3053, Australia
VPAC is a not-for-profit Registered Research Agency
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COMMAND   PID USER   FD   TYPE             DEVICE     SIZE      NODE NAME
pbs_mom 11049 root  cwd    DIR               8,17     4096   1654853 /usr/spool/PBS/mom_priv
pbs_mom 11049 root  rtd    DIR                8,2     4096         2 /
pbs_mom 11049 root  txt    REG               0,20   764944 605806717 /usr/local/torque/2.3.1-snap.200805191843/sbin/pbs_mom (tango-m:/usr/local)
pbs_mom 11049 root  mem    REG                8,2   130304    389860 /lib64/ld-2.5.so
pbs_mom 11049 root  mem    REG                8,2  1687464    389883 /lib64/libc-2.5.so
pbs_mom 11049 root  mem    REG                8,2    23360    389897 /lib64/libdl-2.5.so
pbs_mom 11049 root  mem    REG                8,2    18152    392292 /lib64/libutil-2.5.so
pbs_mom 11049 root  mem    REG                8,2    92736    392017 /lib64/libresolv-2.5.so
pbs_mom 11049 root  mem    REG                8,2    10000    392281 /lib64/libcom_err.so.2.1
pbs_mom 11049 root  mem    REG               0,20   619097 588866689 /usr/local/torque/2.3.1-snap.200805191843/lib/libtorque.so.2.0.0 (tango-m:/usr/local)
pbs_mom 11049 root  mem    REG                8,2    53880    389906 /lib64/libnss_files-2.5.so
pbs_mom 11049 root  mem    REG                8,2  3074472   1038542 /lib64/libnss_ldap-2.5.so
pbs_mom 11049 root  mem    REG                8,2    23632    389904 /lib64/libnss_dns-2.5.so
pbs_mom 11049 root    0r   CHR                1,3                633 /dev/null
pbs_mom 11049 root    1w   CHR                1,3                633 /dev/null
pbs_mom 11049 root    2w   CHR                1,3                633 /dev/null
pbs_mom 11049 root    3w   REG               8,17 33489421   1654881 /usr/spool/PBS/mom_logs/20080528
pbs_mom 11049 root    4wW  REG               8,17        7   1654864 /usr/spool/PBS/mom_priv/mom.lock
pbs_mom 11049 root    5u  IPv4            4968238                TCP *:15002 (LISTEN)
pbs_mom 11049 root    6u  IPv4            4968239                TCP *:15003 (LISTEN)
pbs_mom 11049 root    7u  IPv4            4968240                UDP *:15003 
pbs_mom 11049 root    8u  IPv4            4968241                UDP *:1023 
pbs_mom 11049 root    9r   DIR                0,3        0         1 /proc
pbs_mom 11049 root   10u  IPv4         1762587306                TCP tango073-s.vpac.org:55595->stg3-s.vpac.org:ldap (ESTABLISHED)
pbs_mom 11049 root   11r   DIR               0,24        0   5069883 /dev/cpuset/torque/396818.tango-m.vpac.org (deleted)
pbs_mom 11049 root   12r   DIR               0,24        0   4970529 /dev/cpuset/torque/395015.tango-m.vpac.org (deleted)
pbs_mom 11049 root   13r   DIR               0,24        0   4970607 /dev/cpuset/torque/395015.tango-m.vpac.org/17 (deleted)
pbs_mom 11049 root   14r   REG               0,24        0   4970608 /dev/cpuset/torque/395015.tango-m.vpac.org/17/tasks (deleted)
pbs_mom 11049 root   15r   DIR               0,24        0   4970594 /dev/cpuset/torque/395015.tango-m.vpac.org/16 (deleted)
pbs_mom 11049 root   16r   REG               0,24        0   4970595 /dev/cpuset/torque/395015.tango-m.vpac.org/16/tasks (deleted)
pbs_mom 11049 root   17r   DIR               0,24        0   4970581 /dev/cpuset/torque/395015.tango-m.vpac.org/15 (deleted)
pbs_mom 11049 root   18r   REG               0,24        0   4970582 /dev/cpuset/torque/395015.tango-m.vpac.org/15/tasks (deleted)
pbs_mom 11049 root   19r   DIR               0,24        0   4970568 /dev/cpuset/torque/395015.tango-m.vpac.org/14 (deleted)
pbs_mom 11049 root   20r   REG               0,24        0   4970569 /dev/cpuset/torque/395015.tango-m.vpac.org/14/tasks (deleted)
pbs_mom 11049 root   21r   DIR               0,24        0   4970555 /dev/cpuset/torque/395015.tango-m.vpac.org/13 (deleted)
pbs_mom 11049 root   22r   REG               0,24        0   4970556 /dev/cpuset/torque/395015.tango-m.vpac.org/13/tasks (deleted)
pbs_mom 11049 root   23r   DIR               0,24        0   4970542 /dev/cpuset/torque/395015.tango-m.vpac.org/12 (deleted)
pbs_mom 11049 root   24r   REG               0,24        0   4970543 /dev/cpuset/torque/395015.tango-m.vpac.org/12/tasks (deleted)
pbs_mom 11049 root   25r   REG               0,24        0   4970530 /dev/cpuset/torque/395015.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root   26r   DIR               0,24        0   4973333 /dev/cpuset/torque/395022.tango-m.vpac.org (deleted)
pbs_mom 11049 root   27r   DIR               0,24        0   4968556 /dev/cpuset/torque/394953.tango-m.vpac.org (deleted)
pbs_mom 11049 root   28r   DIR               0,24        0   4968569 /dev/cpuset/torque/394953.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root   29r   REG               0,24        0   4968570 /dev/cpuset/torque/394953.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root   30r   REG               0,24        0   4968557 /dev/cpuset/torque/394953.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root   31r   DIR               0,24        0   4968626 /dev/cpuset/torque/394956.tango-m.vpac.org (deleted)
pbs_mom 11049 root   32r   DIR               0,24        0   4968639 /dev/cpuset/torque/394956.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root   33r   REG               0,24        0   4968640 /dev/cpuset/torque/394956.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root   34r   REG               0,24        0   4968627 /dev/cpuset/torque/394956.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root   35r   DIR               0,24        0   4973437 /dev/cpuset/torque/395022.tango-m.vpac.org/21 (deleted)
pbs_mom 11049 root   36r   REG               0,24        0   4973438 /dev/cpuset/torque/395022.tango-m.vpac.org/21/tasks (deleted)
pbs_mom 11049 root   37r   DIR               0,24        0   4973424 /dev/cpuset/torque/395022.tango-m.vpac.org/20 (deleted)
pbs_mom 11049 root   38r   REG               0,24        0   4973425 /dev/cpuset/torque/395022.tango-m.vpac.org/20/tasks (deleted)
pbs_mom 11049 root   39r   DIR               0,24        0   4973411 /dev/cpuset/torque/395022.tango-m.vpac.org/19 (deleted)
pbs_mom 11049 root   40r   REG               0,24        0   4973412 /dev/cpuset/torque/395022.tango-m.vpac.org/19/tasks (deleted)
pbs_mom 11049 root   41r   DIR               0,24        0   4973398 /dev/cpuset/torque/395022.tango-m.vpac.org/18 (deleted)
pbs_mom 11049 root   42r   REG               0,24        0   4973399 /dev/cpuset/torque/395022.tango-m.vpac.org/18/tasks (deleted)
pbs_mom 11049 root   43r   DIR               0,24        0   4973385 /dev/cpuset/torque/395022.tango-m.vpac.org/17 (deleted)
pbs_mom 11049 root   44r   REG               0,24        0   4973386 /dev/cpuset/torque/395022.tango-m.vpac.org/17/tasks (deleted)
pbs_mom 11049 root   45r   DIR               0,24        0   4973372 /dev/cpuset/torque/395022.tango-m.vpac.org/16 (deleted)
pbs_mom 11049 root   46r   REG               0,24        0   4973373 /dev/cpuset/torque/395022.tango-m.vpac.org/16/tasks (deleted)
pbs_mom 11049 root   47r   DIR               0,24        0   4973359 /dev/cpuset/torque/395022.tango-m.vpac.org/15 (deleted)
pbs_mom 11049 root   48r   REG               0,24        0   4973360 /dev/cpuset/torque/395022.tango-m.vpac.org/15/tasks (deleted)
pbs_mom 11049 root   49r   DIR               0,24        0   4973346 /dev/cpuset/torque/395022.tango-m.vpac.org/14 (deleted)
pbs_mom 11049 root   50r   REG               0,24        0   4973347 /dev/cpuset/torque/395022.tango-m.vpac.org/14/tasks (deleted)
pbs_mom 11049 root   51r   REG               0,24        0   4973334 /dev/cpuset/torque/395022.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root   52r   DIR               0,24        0   4973933 /dev/cpuset/torque/395023.tango-m.vpac.org (deleted)
pbs_mom 11049 root   53r   DIR               0,24        0   4974037 /dev/cpuset/torque/395023.tango-m.vpac.org/31 (deleted)
pbs_mom 11049 root   54r   REG               0,24        0   4974038 /dev/cpuset/torque/395023.tango-m.vpac.org/31/tasks (deleted)
pbs_mom 11049 root   55r   DIR               0,24        0   4974024 /dev/cpuset/torque/395023.tango-m.vpac.org/30 (deleted)
pbs_mom 11049 root   56r   REG               0,24        0   4974025 /dev/cpuset/torque/395023.tango-m.vpac.org/30/tasks (deleted)
pbs_mom 11049 root   57r   DIR               0,24        0   4974011 /dev/cpuset/torque/395023.tango-m.vpac.org/29 (deleted)
pbs_mom 11049 root   58r   REG               0,24        0   4974012 /dev/cpuset/torque/395023.tango-m.vpac.org/29/tasks (deleted)
pbs_mom 11049 root   59r   DIR               0,24        0   4973998 /dev/cpuset/torque/395023.tango-m.vpac.org/28 (deleted)
pbs_mom 11049 root   60r   REG               0,24        0   4973999 /dev/cpuset/torque/395023.tango-m.vpac.org/28/tasks (deleted)
pbs_mom 11049 root   61r   DIR               0,24        0   4973985 /dev/cpuset/torque/395023.tango-m.vpac.org/27 (deleted)
pbs_mom 11049 root   62r   REG               0,24        0   4973986 /dev/cpuset/torque/395023.tango-m.vpac.org/27/tasks (deleted)
pbs_mom 11049 root   63r   DIR               0,24        0   4973972 /dev/cpuset/torque/395023.tango-m.vpac.org/26 (deleted)
pbs_mom 11049 root   64r   REG               0,24        0   4973973 /dev/cpuset/torque/395023.tango-m.vpac.org/26/tasks (deleted)
pbs_mom 11049 root   65r   DIR               0,24        0   4973959 /dev/cpuset/torque/395023.tango-m.vpac.org/25 (deleted)
pbs_mom 11049 root   66r   REG               0,24        0   4973960 /dev/cpuset/torque/395023.tango-m.vpac.org/25/tasks (deleted)
pbs_mom 11049 root   67r   DIR               0,24        0   4973946 /dev/cpuset/torque/395023.tango-m.vpac.org/24 (deleted)
pbs_mom 11049 root   68r   REG               0,24        0   4973947 /dev/cpuset/torque/395023.tango-m.vpac.org/24/tasks (deleted)
pbs_mom 11049 root   69r   REG               0,24        0   4973934 /dev/cpuset/torque/395023.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root   70r   DIR               0,24        0   4974512 /dev/cpuset/torque/395025.tango-m.vpac.org (deleted)
pbs_mom 11049 root   71r   DIR               0,24        0   4974616 /dev/cpuset/torque/395025.tango-m.vpac.org/33 (deleted)
pbs_mom 11049 root   72r   REG               0,24        0   4974617 /dev/cpuset/torque/395025.tango-m.vpac.org/33/tasks (deleted)
pbs_mom 11049 root   73r   DIR               0,24        0   4974603 /dev/cpuset/torque/395025.tango-m.vpac.org/32 (deleted)
pbs_mom 11049 root   74r   REG               0,24        0   4974604 /dev/cpuset/torque/395025.tango-m.vpac.org/32/tasks (deleted)
pbs_mom 11049 root   75r   DIR               0,24        0   4974590 /dev/cpuset/torque/395025.tango-m.vpac.org/31 (deleted)
pbs_mom 11049 root   76r   REG               0,24        0   4974591 /dev/cpuset/torque/395025.tango-m.vpac.org/31/tasks (deleted)
pbs_mom 11049 root   77r   DIR               0,24        0   4974577 /dev/cpuset/torque/395025.tango-m.vpac.org/30 (deleted)
pbs_mom 11049 root   78r   REG               0,24        0   4974578 /dev/cpuset/torque/395025.tango-m.vpac.org/30/tasks (deleted)
pbs_mom 11049 root   79r   DIR               0,24        0   4974564 /dev/cpuset/torque/395025.tango-m.vpac.org/29 (deleted)
pbs_mom 11049 root   80r   REG               0,24        0   4974565 /dev/cpuset/torque/395025.tango-m.vpac.org/29/tasks (deleted)
pbs_mom 11049 root   81r   DIR               0,24        0   4974551 /dev/cpuset/torque/395025.tango-m.vpac.org/28 (deleted)
pbs_mom 11049 root   82r   REG               0,24        0   4974552 /dev/cpuset/torque/395025.tango-m.vpac.org/28/tasks (deleted)
pbs_mom 11049 root   83r   DIR               0,24        0   4974538 /dev/cpuset/torque/395025.tango-m.vpac.org/27 (deleted)
pbs_mom 11049 root   84r   REG               0,24        0   4974539 /dev/cpuset/torque/395025.tango-m.vpac.org/27/tasks (deleted)
pbs_mom 11049 root   85r   DIR               0,24        0   4974525 /dev/cpuset/torque/395025.tango-m.vpac.org/26 (deleted)
pbs_mom 11049 root   86r   REG               0,24        0   4974526 /dev/cpuset/torque/395025.tango-m.vpac.org/26/tasks (deleted)
pbs_mom 11049 root   87r   REG               0,24        0   4974513 /dev/cpuset/torque/395025.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root   88r   DIR               0,24        0   4975119 /dev/cpuset/torque/395027.tango-m.vpac.org (deleted)
pbs_mom 11049 root   89r   DIR               0,24        0   4975223 /dev/cpuset/torque/395027.tango-m.vpac.org/33 (deleted)
pbs_mom 11049 root   90r   REG               0,24        0   4975224 /dev/cpuset/torque/395027.tango-m.vpac.org/33/tasks (deleted)
pbs_mom 11049 root   91r   DIR               0,24        0   4975210 /dev/cpuset/torque/395027.tango-m.vpac.org/32 (deleted)
pbs_mom 11049 root   92r   REG               0,24        0   4975211 /dev/cpuset/torque/395027.tango-m.vpac.org/32/tasks (deleted)
pbs_mom 11049 root   93r   DIR               0,24        0   4975197 /dev/cpuset/torque/395027.tango-m.vpac.org/31 (deleted)
pbs_mom 11049 root   94r   REG               0,24        0   4975198 /dev/cpuset/torque/395027.tango-m.vpac.org/31/tasks (deleted)
pbs_mom 11049 root   95r   DIR               0,24        0   4975184 /dev/cpuset/torque/395027.tango-m.vpac.org/30 (deleted)
pbs_mom 11049 root   96r   REG               0,24        0   4975185 /dev/cpuset/torque/395027.tango-m.vpac.org/30/tasks (deleted)
pbs_mom 11049 root   97r   DIR               0,24        0   4975171 /dev/cpuset/torque/395027.tango-m.vpac.org/29 (deleted)
pbs_mom 11049 root   98r   REG               0,24        0   4975172 /dev/cpuset/torque/395027.tango-m.vpac.org/29/tasks (deleted)
pbs_mom 11049 root   99r   DIR               0,24        0   4975158 /dev/cpuset/torque/395027.tango-m.vpac.org/28 (deleted)
pbs_mom 11049 root  100r   REG               0,24        0   4975159 /dev/cpuset/torque/395027.tango-m.vpac.org/28/tasks (deleted)
pbs_mom 11049 root  101r   DIR               0,24        0   4975145 /dev/cpuset/torque/395027.tango-m.vpac.org/27 (deleted)
pbs_mom 11049 root  102r   REG               0,24        0   4975146 /dev/cpuset/torque/395027.tango-m.vpac.org/27/tasks (deleted)
pbs_mom 11049 root  103r   DIR               0,24        0   4975132 /dev/cpuset/torque/395027.tango-m.vpac.org/26 (deleted)
pbs_mom 11049 root  104r   REG               0,24        0   4975133 /dev/cpuset/torque/395027.tango-m.vpac.org/26/tasks (deleted)
pbs_mom 11049 root  105r   REG               0,24        0   4975120 /dev/cpuset/torque/395027.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  106r   DIR               0,24        0   4983225 /dev/cpuset/torque/395075.tango-m.vpac.org (deleted)
pbs_mom 11049 root  107r   DIR               0,24        0   4976060 /dev/cpuset/torque/395059.tango-m.vpac.org (deleted)
pbs_mom 11049 root  108r   DIR               0,24        0   4976073 /dev/cpuset/torque/395059.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  109r   REG               0,24        0   4976074 /dev/cpuset/torque/395059.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  110r   REG               0,24        0   4976061 /dev/cpuset/torque/395059.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  111r   DIR               0,24        0   4975386 /dev/cpuset/torque/395053.tango-m.vpac.org (deleted)
pbs_mom 11049 root  112r   DIR               0,24        0   4975399 /dev/cpuset/torque/395053.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  113r   REG               0,24        0   4975400 /dev/cpuset/torque/395053.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  114r   REG               0,24        0   4975387 /dev/cpuset/torque/395053.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  115r   DIR               0,24        0   4975505 /dev/cpuset/torque/395054.tango-m.vpac.org (deleted)
pbs_mom 11049 root  116r   DIR               0,24        0   4975518 /dev/cpuset/torque/395054.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  117r   REG               0,24        0   4975519 /dev/cpuset/torque/395054.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  118r   REG               0,24        0   4975506 /dev/cpuset/torque/395054.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  119r   DIR               0,24        0   4975727 /dev/cpuset/torque/395056.tango-m.vpac.org (deleted)
pbs_mom 11049 root  120r   DIR               0,24        0   4975740 /dev/cpuset/torque/395056.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  121r   REG               0,24        0   4975741 /dev/cpuset/torque/395056.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  122r   REG               0,24        0   4975728 /dev/cpuset/torque/395056.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  123r   DIR               0,24        0   4975949 /dev/cpuset/torque/395058.tango-m.vpac.org (deleted)
pbs_mom 11049 root  124r   DIR               0,24        0   4975962 /dev/cpuset/torque/395058.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  125r   REG               0,24        0   4975963 /dev/cpuset/torque/395058.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  126r   REG               0,24        0   4975950 /dev/cpuset/torque/395058.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  127r   DIR               0,24        0   4976171 /dev/cpuset/torque/395060.tango-m.vpac.org (deleted)
pbs_mom 11049 root  128r   DIR               0,24        0   4975838 /dev/cpuset/torque/395057.tango-m.vpac.org (deleted)
pbs_mom 11049 root  129r   DIR               0,24        0   4975851 /dev/cpuset/torque/395057.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  130r   REG               0,24        0   4975852 /dev/cpuset/torque/395057.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  131r   REG               0,24        0   4975839 /dev/cpuset/torque/395057.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  132r   DIR               0,24        0   4975616 /dev/cpuset/torque/395055.tango-m.vpac.org (deleted)
pbs_mom 11049 root  133r   DIR               0,24        0   4975629 /dev/cpuset/torque/395055.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  134r   REG               0,24        0   4975630 /dev/cpuset/torque/395055.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  135r   REG               0,24        0   4975617 /dev/cpuset/torque/395055.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  136r   DIR               0,24        0   4976184 /dev/cpuset/torque/395060.tango-m.vpac.org/0 (deleted)
pbs_mom 11049 root  137r   REG               0,24        0   4976185 /dev/cpuset/torque/395060.tango-m.vpac.org/0/tasks (deleted)
pbs_mom 11049 root  138r   REG               0,24        0   4976172 /dev/cpuset/torque/395060.tango-m.vpac.org/tasks (deleted)
pbs_mom 11049 root  139r   DIR               0,24        0   4984908 /dev/cpuset/torque/395140.tango-m.vpac.org (deleted)
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pbs_mom 11049 root 1023w  FIFO                0,5            5090217 pipe


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