[torqueusers] need help with OSC's mpiexec 'runtests.pl'

Prakash Velayutham prakash.velayutham at cchmc.org
Thu May 15 17:43:19 MDT 2008


Hi,

It has been a while since I ran those tests, but I think you see such  
lines during testing.

TM means Task Manager.

Prakash

On May 15, 2008, at 7:31 PM, chenyong wrote:

> Hello All,
>
>
> I am trying to install OSC's mipexec on my system, but encounter  
> some problems.
>
> When run ./runtests.pl, i observed the following output. I am not  
> sure whether the hello test './runtests.pl' is successful or not,  
> and hesitate to proceed to the subsequent steps. As mentioned in  
> README, it seems to be abnormal as there are serveral lines of   
> "unexpected line". and one line of "got XXX lines".
>
> I am using MPICH2 1.0.5 from anl.org and torque 2.1.1. I do add the  
> option --with-default-comm = mpich2-pmi when executing ./configure  
> as indicated in README.
>
> I login to the admin node (xcat1) as user 'yongchen', then run  
> 'runtests.pl'
>
> I am new to torque and MPI, and need your help.
>
> By the way, what does TM mean in the phrase "TM interface".
> Thank you.
>
>
> Felix
>
> [yongchen at hpc01 mpiexec-0.82]$ ./runtests.pl
> Testing 4 nodes with SMP size 2.
> 196 to testqo.5304.01 mpiexec -n 1  
> hello .......................................................
> File testqo.5304.01: unexpected line:
> File testqo.5304.01: unexpected line: Begin PBS Prologue Thu May 15  
> 18:48:42 CST 2008
> File testqo.5304.01: unexpected line: Job ID:           196.xcat1
> File testqo.5304.01: unexpected line: Username: yongchen
> File testqo.5304.01: unexpected line: Group:            yongchen
> File testqo.5304.01: unexpected line: Nodes:            hpc11 hpc12  
> hpc13 hpc14
> File testqo.5304.01: unexpected line: End PBS Prologue Thu May 15  
> 18:48:42 CST 2008
> File testqo.5304.01: unexpected line:
> File testqo.5304.01: unexpected line:
> File testqo.5304.01: unexpected line: Begin PBS Ep ilogue Thu May 15  
> 18:48:48 CST 2008
> File testqo.5304.01: unexpected line: Job ID:           196.xcat1
> File testqo.5304.01: unexpected line: Username: yongchen
> File testqo.5304.01: unexpected line: Group:            yongchen
> File testqo.5304.01: unexpected line: Job Name: testqs.5304.01
> File testqo.5304.01: unexpected line: Session:  29719
> File testqo.5304.01: unexpected line: Limits:            
> cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00
> File testqo.5304.01: unexpected line: Resources:         
> cput=00:00:00,mem=3996kb,vmem=15264kb,walltime=00:00:01
> File testqo.5304.01: unexpected line: Queue:            dque
> File testqo.5304.01: unexpected line: Account:
> File testqo.5304.01: unexpec ted line: Nodes:    hpc11 hpc12 hpc13  
> hpc14
> File testqo.5304.01: unexpected line: Killing leftovers...
> File testqo.5304.01: unexpected line:
> File testqo.5304.01: unexpected line: End PBS Epilogue Thu May 15  
> 18:48:49 CST 2008
> File testqo.5304.01: unexpected line:
> File testqo.5304.01: got 24 lines, expected 0.
> 197 to testqo.5304.02 mpiexec -n 2  
> hello ..........................................................
> File testqo.5304.02: unexpected line:
> File testqo.5304.02: unexpected line: Begin PBS Prologue Thu May 15  
> 18:49:43 CST 2008
> File testqo.5304.02: unexpected line: Job ID:           197.xcat1
> File testqo.5304.02: unexpected line: Username: yongchen
> File testqo.5304.02: unexpected line: Group:            yongchen
> File testqo.5304.02: unexpected line: Nodes:          &nbs p; hpc11  
> hpc12 hpc13 hpc14
> File testqo.5304.02: unexpected line: End PBS Prologue Thu May 15  
> 18:49:43 CST 2008
> File testqo.5304.02: unexpected line:
> File testqo.5304.02: unexpected line:
> File testqo.5304.02: unexpected line: Begin PBS Epilogue Thu May 15  
> 18:49:49 CST 2008
> File testqo.5304.02: unexpected line: Job ID:           197.xcat1
> File testqo.5304.02: unexpected line: Username: yongchen
> File testqo.5304.02: unexpected line: Group:            yongchen
> File testqo.5304.02: unexpected line: Job Name: testqs.5304.02
> File testqo.5304.02: unexpected line: Session:  30125
> File testqo.5304.02: unexpected line: Limits:            
> cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00
> File testqo.5304.02: unexpected line: Resources:        cput=  
> 00:00:00,mem=4004kb,vmem=15264kb,walltime=00:00:01
> File testqo.5304.02: unexpected line: Queue:            dque
> File testqo.5304.02: unexpected line: Account:
> File testqo.5304.02: unexpected line: Nodes:    hpc11 hpc12 hpc13  
> hpc14
> File testqo.5304.02: unexpected line: Killing leftovers...
> File testqo.5304.02: unexpected line:
> File testqo.5304.02: unexpected line: End PBS Epilogue Thu May 15  
> 18:49:49 CST 2008
> File testqo.5304.02: unexpected line:
> File testqo.5304.02: got 24 lines, expected 0.
> 198 to testqo.5304.03 mpiexec -n 3  
> hello ..........................................................
> File testqo.5304.03: unexpected line:
> File testqo.5304.03: unexpected line: Begin PBS Prologue Thu May 15  
> 18:50:44 CST 2008
> File testqo.5304.03: unexpected line: Job ID:           198.xcat1
> File testqo.5304.03: unexpected line: Us ername: yongchen
> File testqo.5304.03: unexpected line: Group:            yongchen
> File testqo.5304.03: unexpected line: Nodes:            hpc11 hpc12  
> hpc13 hpc14
> File testqo.5304.03: unexpected line: End PBS Prologue Thu May 15  
> 18:50:44 CST 2008
> File testqo.5304.03: unexpected line:
> File testqo.5304.03: unexpected line:
> File testqo.5304.03: unexpected line: Begin PBS Epilogue Thu May 15  
> 18:50:50 CST 2008
> File testqo.5304.03: unexpected line: Job ID:           198.xcat1
> File testqo.5304.03: unexpected line: Username: yongchen
> File testqo.5304.03: unexpected line: Group:            yongchen
> File testqo.5304.03: unexpected line: Job Name: testqs.5304.03
> File testqo.5304.03: unexpected line: Session:  30537
> File testqo.5304.0 3: unexpected line: Limits:            
> cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00
> File testqo.5304.03: unexpected line: Resources:         
> cput=00:00:00,mem=4004kb,vmem=15264kb,walltime=00:00:01
> File testqo.5304.03: unexpected line: Queue:            dque
> File testqo.5304.03: unexpected line: Account:
> File testqo.5304.03: unexpected line: Nodes:    hpc11 hpc12 hpc13  
> hpc14
> File testqo.5304.03: unexpected line: Killing leftovers...
> File testqo.5304.03: unexpected line:
> File testqo.5304.03: unexpected line: End PBS Epilogue Thu May 15  
> 18:50:51 CST 2008
> File testqo.5304.03: unexpected line:
> File testqo.5304.03: got 24 lines, expected 0.
> 199 to testqo.5304.04 mpiexec -n 8  
> hello ..........................................................
> File testqo.5304.04: unexpected line: < BR>File testqo.5304.04:  
> unexpected line: Begin PBS Prologue Thu May 15 18:51:45 CST 2008
> File testqo.5304.04: unexpected line: Job ID:           199.xcat1
> File testqo.5304.04: unexpected line: Username: yongchen
> File testqo.5304.04: unexpected line: Group:            yongchen
> File testqo.5304.04: unexpected line: Nodes:            hpc11 hpc12  
> hpc13 hpc14
> File testqo.5304.04: unexpected line: End PBS Prologue Thu May 15  
> 18:51:45 CST 2008
> File testqo.5304.04: unexpected line:
> File testqo.5304.04: unexpected line:
> File testqo.5304.04: unexpected line: Begin PBS Epilogue Thu May 15  
> 18:51:51 CST 2008
> File testqo.5304.04: unexpected line: Job ID:           199.xcat1
> File testqo.5304.04: unexpected line: Username: yongchen
> File testqo.5304.0 4: unexpected line: Group:            yongchen
> File testqo.5304.04: unexpected line: Job Name: testqs.5304.04
> File testqo.5304.04: unexpected line: Session:  30944
> File testqo.5304.04: unexpected line: Limits:            
> cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00
> File testqo.5304.04: unexpected line: Resources:         
> cput=00:00:00,mem=4004kb,vmem=15264kb,walltime=00:00:01
> File testqo.5304.04: unexpected line: Queue:            dque
> File testqo.5304.04: unexpected line: Account:
> File testqo.5304.04: unexpected line: Nodes:    hpc11 hpc12 hpc13  
> hpc14
> File testqo.5304.04: unexpected line: Killing leftovers...
> File testqo.5304.04: unexpected line:
> File testqo.5304.04: unexpected line: End PBS Epilogue Thu May 15  
> 18:5 1:52 CST 2008
> File testqo.5304.04: unexpected line:
> File testqo.5304.04: got 24 lines, expected 0.
> 200 to testqo.5304.05 mpiexec -pernode  
> hello ..........................................................
> File testqo.5304.05: unexpected line:
> File testqo.5304.05: unexpected line: Begin PBS Prologue Thu May 15  
> 18:52:46 CST 2008
> File testqo.5304.05: unexpected line: Job ID:           200.xcat1
> File testqo.5304.05: unexpected line: Username: yongchen
> File testqo.5304.05: unexpected line: Group:            yongchen
> File testqo.5304.05: unexpected line: Nodes:            hpc11 hpc12  
> hpc13 hpc14
> File testqo.5304.05: unexpected line: End PBS Prologue Thu May 15  
> 18:52:46 CST 2008
> File testqo.5304.05: unexpected line:
> File testqo.5304.05: unexpected line:
> File testqo.5304.05: unexpected line: Begin PBS Epilogue Thu May 15  
> 18:52:52 CST 2008
> File testqo.5304.05: unexpected line: Job ID:           200.xcat1
> File testqo.5304.05: unexpected line: Username: yongchen
> File testqo.5304.05: unexpected line: Group:            yongchen
> File testqo.5304.05: unexpected line: Job Name: testqs.5304.05
> File testqo.5304.05: unexpected line: Session:  31351
> File testqo.5304.05: unexpected line: Limits:            
> cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00
> File testqo.5304.05: unexpected line: Resources:         
> cput=00:00:00,mem=3996kb,vmem=15264kb,walltime=00:00:01
> File testqo.5304.05: unexpected line: Queue:            dque
> File testqo.5304.05: unexpected line: Account:
> File test qo.5304.05: unexpected line: Nodes:    hpc11 hpc12 hpc13  
> hpc14
> File testqo.5304.05: unexpected line: Killing leftovers...
> File testqo.5304.05: unexpected line:
> File testqo.5304.05: unexpected line: End PBS Epilogue Thu May 15  
> 18:52:53 CST 2008
> File testqo.5304.05: unexpected line:
> File testqo.5304.05: got 24 lines, expected 0.
> 201 to testqo.5304.06 mpiexec -nolocal  
> hello ..................................................
>
> [yongchen at hpc01 mpiexec-0.82]$ more testqo.5304.01
> Begin PBS Prologue Thu May 15 18:48:42 CST 2008
> Job ID:         196.xcat1
> Username:       yongchen
> Group:          yongchen
> Nodes:          hpc11 hpc12 hpc13 hpc14
> End PBS Prologue Thu May 15 18:48:42 CST 2008
>
> Begin PBS Epilogue Thu May 15 18:48:48 CST 2008
> Job ID:          196.xcat1
> Username:       yongchen
> Group:          yongchen
> Job Name:       testqs.5304.01
> Session:        29719
> Limits:          
> cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00
> Resources:       
> cput=00:00:00,mem=3996kb,vmem=15264kb,walltime=00:00:01
> Queue:          dque
> Account:
> Nodes:  hpc11 hpc12 hpc13 hpc14
> Killing leftovers...
> End PBS Epilogue Thu May 15 18:48:49 CST 2008
> [yongchen at hpc01 mpiexec-0.82]$ more testqs.5304.01
> #!/bin/sh
> #PBS -l nodes=4:ppn=2
> #PBS -l walltime=5:00
> #PBS -l cput=40:00
> #PBS -j oe
> #PBS -o testqo.5304.01
> cd /home/yongchen/mpiexec-0.82
> echo '[1+pd5>x]sx0lxxq' | dc | ./mpiexec  -n 1 hello   > testho. 
> 5304.01 2>&1
> [yongchen at hpc01 mpiexec-0.82]$ more testho.5304.01
> hello from 0/1 hostname hpc14 pid 29933 with 0 args:
>
> [yongchen at hpc01 mpiexec-0.82]$ more testho.5304.04
> hello from 0/8 hostname hpc14 pid 31158 with 0 args:
> hello from 1/8 hostname hpc14 pid 31159 with 0 args:
> hello from 2/8 hostname hpc13 pid 4045 with 0 args:
> hello from 4/8 hostname hpc12 pid 3289 with 0 args:
> hello from 6/8 hostname hpc11 pid 3289 with 0 args:
> hello from 3/8 hostname hpc13 pid 4046 with 0 args:
> hello from 7/8 hostname hpc11 pid 3290 with 0 args:
> hello from 5/8 hostname hpc12 pid 3290 with 0 args:
> [yongchen at hpc01 mpiexec-0.82]$
>
>
> ÇáËÉ°ÑHotmailÏÂÔص½±¾µØ£¬ÊÔÊÔ Windows  
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Prakash Velayutham
Programmer / Analyst
Cincinnati Children's Hospital Medical Center

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