[torqueusers] need help with OSC's mpiexec 'runtests.pl'

chenyong cy163 at hotmail.com
Thu May 15 17:31:08 MDT 2008


Hello All,
 
 
I am trying to install OSC's mipexec on my system, but encounter some problems.
 
When run ./runtests.pl, i observed the following output. I am not sure whether the hello test './runtests.pl' is successful or not, and hesitate to proceed to the subsequent steps. As mentioned in README, it seems to be abnormal as there are serveral lines of  "unexpected line". and one line of "got XXX lines".
I am using MPICH2 1.0.5 from anl.org and torque 2.1.1. I do add the option --with-default-comm = mpich2-pmi when executing ./configure as indicated in README.
I login to the admin node (xcat1) as user 'yongchen', then run 'runtests.pl'
I am new to torque and MPI, and need your help.By the way, what does TM mean in the phrase "TM interface".Thank you.
 
Felix[yongchen at hpc01 mpiexec-0.82]$ ./runtests.pl Testing 4 nodes with SMP size 2.196 to testqo.5304.01 mpiexec -n 1 hello .......................................................File testqo.5304.01: unexpected line: File testqo.5304.01: unexpected line: Begin PBS Prologue Thu May 15 18:48:42 CST 2008File testqo.5304.01: unexpected line: Job ID:           196.xcat1File testqo.5304.01: unexpected line: Username: yongchenFile testqo.5304.01: unexpected line: Group:            yongchenFile testqo.5304.01: unexpected line: Nodes:            hpc11 hpc12 hpc13 hpc14File testqo.5304.01: unexpected line: End PBS Prologue Thu May 15 18:48:42 CST 2008File testqo.5304.01: unexpected line: File testqo.5304.01: unexpected line: File testqo.5304.01: unexpected line: Begin PBS Epilogue Thu May 15 18:48:48 CST 2008File testqo.5304.01: unexpected line: Job ID:           196.xcat1File testqo.5304.01: unexpected line: Username: yongchenFile testqo.5304.01: unexpected line: Group:            yongchenFile testqo.5304.01: unexpected line: Job Name: testqs.5304.01File testqo.5304.01: unexpected line: Session:  29719File testqo.5304.01: unexpected line: Limits:           cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00File testqo.5304.01: unexpected line: Resources:        cput=00:00:00,mem=3996kb,vmem=15264kb,walltime=00:00:01File testqo.5304.01: unexpected line: Queue:            dqueFile testqo.5304.01: unexpected line: Account:File testqo.5304.01: unexpected line: Nodes:    hpc11 hpc12 hpc13 hpc14File testqo.5304.01: unexpected line: Killing leftovers...File testqo.5304.01: unexpected line: File testqo.5304.01: unexpected line: End PBS Epilogue Thu May 15 18:48:49 CST 2008File testqo.5304.01: unexpected line: File testqo.5304.01: got 24 lines, expected 0.197 to testqo.5304.02 mpiexec -n 2 hello ..........................................................File testqo.5304.02: unexpected line: File testqo.5304.02: unexpected line: Begin PBS Prologue Thu May 15 18:49:43 CST 2008File testqo.5304.02: unexpected line: Job ID:           197.xcat1File testqo.5304.02: unexpected line: Username: yongchenFile testqo.5304.02: unexpected line: Group:            yongchenFile testqo.5304.02: unexpected line: Nodes:            hpc11 hpc12 hpc13 hpc14File testqo.5304.02: unexpected line: End PBS Prologue Thu May 15 18:49:43 CST 2008File testqo.5304.02: unexpected line: File testqo.5304.02: unexpected line: File testqo.5304.02: unexpected line: Begin PBS Epilogue Thu May 15 18:49:49 CST 2008File testqo.5304.02: unexpected line: Job ID:           197.xcat1File testqo.5304.02: unexpected line: Username: yongchenFile testqo.5304.02: unexpected line: Group:            yongchenFile testqo.5304.02: unexpected line: Job Name: testqs.5304.02File testqo.5304.02: unexpected line: Session:  30125File testqo.5304.02: unexpected line: Limits:           cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00File testqo.5304.02: unexpected line: Resources:        cput=00:00:00,mem=4004kb,vmem=15264kb,walltime=00:00:01File testqo.5304.02: unexpected line: Queue:            dqueFile testqo.5304.02: unexpected line: Account:File testqo.5304.02: unexpected line: Nodes:    hpc11 hpc12 hpc13 hpc14File testqo.5304.02: unexpected line: Killing leftovers...File testqo.5304.02: unexpected line: File testqo.5304.02: unexpected line: End PBS Epilogue Thu May 15 18:49:49 CST 2008File testqo.5304.02: unexpected line: File testqo.5304.02: got 24 lines, expected 0.198 to testqo.5304.03 mpiexec -n 3 hello ..........................................................File testqo.5304.03: unexpected line: File testqo.5304.03: unexpected line: Begin PBS Prologue Thu May 15 18:50:44 CST 2008File testqo.5304.03: unexpected line: Job ID:           198.xcat1File testqo.5304.03: unexpected line: Username: yongchenFile testqo.5304.03: unexpected line: Group:            yongchenFile testqo.5304.03: unexpected line: Nodes:            hpc11 hpc12 hpc13 hpc14File testqo.5304.03: unexpected line: End PBS Prologue Thu May 15 18:50:44 CST 2008File testqo.5304.03: unexpected line: File testqo.5304.03: unexpected line: File testqo.5304.03: unexpected line: Begin PBS Epilogue Thu May 15 18:50:50 CST 2008File testqo.5304.03: unexpected line: Job ID:           198.xcat1File testqo.5304.03: unexpected line: Username: yongchenFile testqo.5304.03: unexpected line: Group:            yongchenFile testqo.5304.03: unexpected line: Job Name: testqs.5304.03File testqo.5304.03: unexpected line: Session:  30537File testqo.5304.03: unexpected line: Limits:           cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00File testqo.5304.03: unexpected line: Resources:        cput=00:00:00,mem=4004kb,vmem=15264kb,walltime=00:00:01File testqo.5304.03: unexpected line: Queue:            dqueFile testqo.5304.03: unexpected line: Account:File testqo.5304.03: unexpected line: Nodes:    hpc11 hpc12 hpc13 hpc14File testqo.5304.03: unexpected line: Killing leftovers...File testqo.5304.03: unexpected line: File testqo.5304.03: unexpected line: End PBS Epilogue Thu May 15 18:50:51 CST 2008File testqo.5304.03: unexpected line: File testqo.5304.03: got 24 lines, expected 0.199 to testqo.5304.04 mpiexec -n 8 hello ..........................................................File testqo.5304.04: unexpected line: File testqo.5304.04: unexpected line: Begin PBS Prologue Thu May 15 18:51:45 CST 2008File testqo.5304.04: unexpected line: Job ID:           199.xcat1File testqo.5304.04: unexpected line: Username: yongchenFile testqo.5304.04: unexpected line: Group:            yongchenFile testqo.5304.04: unexpected line: Nodes:            hpc11 hpc12 hpc13 hpc14File testqo.5304.04: unexpected line: End PBS Prologue Thu May 15 18:51:45 CST 2008File testqo.5304.04: unexpected line: File testqo.5304.04: unexpected line: File testqo.5304.04: unexpected line: Begin PBS Epilogue Thu May 15 18:51:51 CST 2008File testqo.5304.04: unexpected line: Job ID:           199.xcat1File testqo.5304.04: unexpected line: Username: yongchenFile testqo.5304.04: unexpected line: Group:            yongchenFile testqo.5304.04: unexpected line: Job Name: testqs.5304.04File testqo.5304.04: unexpected line: Session:  30944File testqo.5304.04: unexpected line: Limits:           cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00File testqo.5304.04: unexpected line: Resources:        cput=00:00:00,mem=4004kb,vmem=15264kb,walltime=00:00:01File testqo.5304.04: unexpected line: Queue:            dqueFile testqo.5304.04: unexpected line: Account:File testqo.5304.04: unexpected line: Nodes:    hpc11 hpc12 hpc13 hpc14File testqo.5304.04: unexpected line: Killing leftovers...File testqo.5304.04: unexpected line: File testqo.5304.04: unexpected line: End PBS Epilogue Thu May 15 18:51:52 CST 2008File testqo.5304.04: unexpected line: File testqo.5304.04: got 24 lines, expected 0.200 to testqo.5304.05 mpiexec -pernode hello ..........................................................File testqo.5304.05: unexpected line: File testqo.5304.05: unexpected line: Begin PBS Prologue Thu May 15 18:52:46 CST 2008File testqo.5304.05: unexpected line: Job ID:           200.xcat1File testqo.5304.05: unexpected line: Username: yongchenFile testqo.5304.05: unexpected line: Group:            yongchenFile testqo.5304.05: unexpected line: Nodes:            hpc11 hpc12 hpc13 hpc14File testqo.5304.05: unexpected line: End PBS Prologue Thu May 15 18:52:46 CST 2008File testqo.5304.05: unexpected line: File testqo.5304.05: unexpected line: File testqo.5304.05: unexpected line: Begin PBS Epilogue Thu May 15 18:52:52 CST 2008File testqo.5304.05: unexpected line: Job ID:           200.xcat1File testqo.5304.05: unexpected line: Username: yongchenFile testqo.5304.05: unexpected line: Group:            yongchenFile testqo.5304.05: unexpected line: Job Name: testqs.5304.05File testqo.5304.05: unexpected line: Session:  31351File testqo.5304.05: unexpected line: Limits:           cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00File testqo.5304.05: unexpected line: Resources:        cput=00:00:00,mem=3996kb,vmem=15264kb,walltime=00:00:01File testqo.5304.05: unexpected line: Queue:            dqueFile testqo.5304.05: unexpected line: Account:File testqo.5304.05: unexpected line: Nodes:    hpc11 hpc12 hpc13 hpc14File testqo.5304.05: unexpected line: Killing leftovers...File testqo.5304.05: unexpected line: File testqo.5304.05: unexpected line: End PBS Epilogue Thu May 15 18:52:53 CST 2008File testqo.5304.05: unexpected line: File testqo.5304.05: got 24 lines, expected 0.201 to testqo.5304.06 mpiexec -nolocal hello ..................................................[yongchen at hpc01 mpiexec-0.82]$ more testqo.5304.01Begin PBS Prologue Thu May 15 18:48:42 CST 2008Job ID:         196.xcat1Username:       yongchenGroup:          yongchenNodes:          hpc11 hpc12 hpc13 hpc14End PBS Prologue Thu May 15 18:48:42 CST 2008Begin PBS Epilogue Thu May 15 18:48:48 CST 2008Job ID:         196.xcat1Username:       yongchenGroup:          yongchenJob Name:       testqs.5304.01Session:        29719Limits:         cput=00:40:00,neednodes=4:ppn=2,nodes=4:ppn=2,walltime=00:05:00Resources:      cput=00:00:00,mem=3996kb,vmem=15264kb,walltime=00:00:01Queue:          dqueAccount:Nodes:  hpc11 hpc12 hpc13 hpc14Killing leftovers...End PBS Epilogue Thu May 15 18:48:49 CST 2008[yongchen at hpc01 mpiexec-0.82]$ more testqs.5304.01#!/bin/sh#PBS -l nodes=4:ppn=2#PBS -l walltime=5:00#PBS -l cput=40:00#PBS -j oe#PBS -o testqo.5304.01cd /home/yongchen/mpiexec-0.82echo '[1+pd5>x]sx0lxxq' | dc | ./mpiexec  -n 1 hello  > testho.5304.01 2>&1[yongchen at hpc01 mpiexec-0.82]$ more testho.5304.01hello from 0/1 hostname hpc14 pid 29933 with 0 args:[yongchen at hpc01 mpiexec-0.82]$ more testho.5304.04hello from 0/8 hostname hpc14 pid 31158 with 0 args:hello from 1/8 hostname hpc14 pid 31159 with 0 args:hello from 2/8 hostname hpc13 pid 4045 with 0 args:hello from 4/8 hostname hpc12 pid 3289 with 0 args:hello from 6/8 hostname hpc11 pid 3289 with 0 args:hello from 3/8 hostname hpc13 pid 4046 with 0 args:hello from 7/8 hostname hpc11 pid 3290 with 0 args:hello from 5/8 hostname hpc12 pid 3290 with 0 args:[yongchen at hpc01 mpiexec-0.82]$
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