[torquedev] torque 4.1.2 login shells problem and bash -l workaround

Charles Henry chenry at ittc.ku.edu
Wed Oct 31 08:01:21 MDT 2012


Hi Chris

Thanks, that is by far the simplest solution.  

I was still trying to debug it yesterday.  I think I'll stop trying and just use that solution, which is compatible with all my other torque configurations, managed through puppet.

Chuck

----- Original Message -----
> From: "Christopher Samuel" <samuel at unimelb.edu.au>
> To: torquedev at supercluster.org
> Sent: Tuesday, October 30, 2012 10:32:46 PM
> Subject: Re: [torquedev] torque 4.1.2 login shells problem and bash -l	workaround
> 
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
> 
> On 19/10/12 05:34, Charles Henry wrote:
> 
> > I have been following the torque 4 development, and I'm currently
> > using torque 4.1.2 on RHEL6.2.  I have found that I cannot get
> > cluster jobs to run correctly without using "#!/bin/bash -l" in
> > each script.
> 
> Just set:
> 
> BASH_ENV=/etc/profile
> 
> in /var/spool/torque/pbs_environment and that will force
> non-interactive bash to run /etc/profile on startup.
> 
> In our environment we do:
> 
> BASH_ENV=/etc/profile.d/modules.sh
> 
> so only modules gets loaded, and then it's up to the users script to
> load the right modules for their job..
> 
> cheers!
> Chris
> - --
>  Christopher Samuel        Senior Systems Administrator
>  VLSCI - Victorian Life Sciences Computation Initiative
>  Email: samuel at unimelb.edu.au Phone: +61 (0)3 903 55545
>  http://www.vlsci.org.au/      http://twitter.com/vlsci
> 
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